The controversial badger cull in England has been expanded to an “unimaginable scale”, according to a leading expert who warned the government is paying far too little attention to the transmission of tuberculosis between cattle when they are traded.

Ministers approved culling in 11 new areas on Wednesday, taking the total to 43. Up to 64,000 animals are likely to be killed this autumn, up from a maximum of 42,000 last year.

TB infections in cattle blight farms and cost taxpayers more than £100m a year in compensation payments. But scientists and conservationists oppose the cull, saying there is little evidence it is effective and is being badly run.

The cull started in 2013 in Gloucester and Somerset and takes place in 43 areas, from Cornwall to Cumbria. A proposed cull in Derbyshire, where a badger vaccination programme has been taking place, was not approved.

A large-scale trial of badger culling that ended in 2006 indicated that a minimum of 70% of a badger population must be killed for a cull to be effective. If fewer are culled, disruption of badger social groups can lead to TB being spread more widely.

However, the culls must not kill every badger either, so minimum and maximum numbers are set. This year’s minimum is 37,482 and the maximum is 64,400. Culls now cover 90% of Wiltshire, 84% of Devon, and 83% of Cornwall.

“The culls have expanded to unimaginable scales, covering an area larger than Israel,” said Prof Rosie Woodroffe, an ecologist at the Zoological Society of London, one of the team that conducted the earlier large-scale trial.

“The review concluded the government and farming industry were paying far too much attention to badger management, and far too little attention to cattle-to-cattle transmission, which is responsible for the majority of TB incidents in cattle.”

The review also called upon government to properly evaluate badger vaccination as a non-lethal alternative to culling, Woodroffe said. “Ministers regularly call for the conservation of wildlife in other countries, but refuse to invest in helping their own farmers to coexist with wildlife.”

Eustice said the government would fully respond to the review in the near future.

Dominic Dyer, chief executive of the Badger Trust, said: “This year will take the number of badgers killed since the cull started to over 130,000, pushing the species to the verge of local extinction in areas of England which it has inhabited since the ice age.

“The public costs of the badger cull are estimated to exceed £60m by the end of 2019, yet the government has provided no evidence to prove this cruel slaughter is having any significant impact on lowering bovine TB.”

Arthur Thomas, the campaigns manager at the animal welfare group IFAW, said: “The expansion to the badger cull is not only a tragedy for British wildlife, but also for our farmers,. The government’s decision flies in the face of scientific evidence.”

Bill Harper, the chair of the National Beef Association’s TB committee, said he believed the decision to turn down the application to cull in Derbyshire was purely political. Prime minister Boris Johnson’s partner, Carrie Symonds, is an opponent of the cull. “It is almost like Boris Johnson is saying, ‘Oh right darling, we will not allow that one’,” Harper told Farmers Weekly.

Prof Ranald Munro was the chair of an independent expert group appointed by the government to assess the first culls, which is now disbanded. He said up to 9,000 badgers are likely to have suffered “immense pain” as a result of the culls.